I don't think that it will affect us one way, or another. Prior to 2002 they were combined, with Environmental Quality being a division within DNR. Much of what DEQ did crossed into DNR's area. I didn't understand the split, at the time, so the consolidation made sense to me.
DEQ funding was generated through Fed grants, and their own permitting fees, and fines. I work closely with both (now one) departments, and know that the funding within the divisions typically comes from restricted funding sources. Those funds are targeted for very specific projects within the earmarked division (i.e. Fisheries funds for Fisheries projects, Parks and Rec funds for P and R projects, etc.). There are even specific program funds for specific program projects within the divisions.
Correction, the split actually occurred around 1996. It sure didn't seem like it was that long ago.